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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
23
ChIP-seq
5
ATAC-seq
3
pCHi-C
3
small RNA-seq
DNase-seq
1
RNA microarray
Assay category
401
Transcription
23
DNA binding
5
DNA accessibility
Target of assay
18
control
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
423
bam
406
bigWig
402
tsv
25
fastq
8
bed narrowPeak
6
bigBed narrowPeak
1
bedpe bed3+
Organism
432
Homo sapiens
Biosample type
430
tissue
2
primary cell
1
in vitro differentiated cells
Organ
729
liver
698
pancreas
550
connective tissue
432
adipose tissue
423
epithelium
353
heart
269
kidney
252
brain
222
vasculature
219
blood vessel
159
bone element
137
artery
85
limb
69
blood
69
bodily fluid
56
eye
41
nerve
37
embryo
35
musculature of body
22
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
433
AMP
Genome assembly (visualization)
409
hg19
406
GRCh38
Lab
433
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA methylation
assay_title!
DNase-seq
month_released!
August, 2017
BIOSAMPLE
ASSAY
433 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
3
1
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
1
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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