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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
ChIP-seq
150
total RNA-seq
117
ATAC-seq
111
single cell RNA-seq
56
snATAC-seq
16
pCHi-C
11
DNase-seq
3
Hi-C
2
small RNA-seq
Assay category
263
Transcription
184
DNA accessibility
168
DNA binding
DNA methylation
3
3D chromatin structure
Target of assay
156
histone
156
histone modification
83
broad histone mark
73
narrow histone mark
11
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
204
May, 2021
139
May, 2020
54
May, 2022
45
February, 2023
42
February, 2021
40
September, 2020
29
August, 2017
15
July, 2019
14
June, 2019
12
September, 2018
10
April, 2018
10
July, 2018
8
January, 2021
6
November, 2020
3
November, 2017
1
June, 2018
1
March, 2023
1
November, 2018
Available data
350
bigWig
331
bam
170
bed narrowPeak
164
fastq
138
tsv
96
tagAlign
73
zippedFastqFolder
30
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
14
bed bed3+
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
634
Homo sapiens
Biosample type
2629
tissue
634
primary cell
566
cell line
260
in vitro differentiated cells
9
stem cell
Organ
epithelium
294
pancreas
35
vasculature
31
blood vessel
26
connective tissue
26
kidney
22
vein
20
brain
12
liver
8
blood
8
bodily fluid
7
heart
5
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
262
AMP
199
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
364
hg19
282
GRCh38
Lab
234
Kyle Gaulton, UCSD
227
AMP-T2D consortium
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
inconsistent ontology term
27
audit script error
Audit category:
23
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_slims!
DNA methylation
assay_title!
MeRIP-seq
audit.ERROR.category!
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
634 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
DNase-seq
Hi-C
small RNA-seq
primary cell
monocyte
85
54
15
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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