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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
Assay category
35
DNA binding
Target of assay
924
histone modification
923
histone
505
transcription factor
465
narrow histone mark
457
broad histone mark
311
control
106
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
15
November, 2017
7
November, 2018
6
January, 2019
3
August, 2017
2
December, 2017
2
December, 2018
Available data
35
bam
35
bed narrowPeak
35
bigWig
35
fastq
33
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
35
Homo sapiens
Biosample type
30
cell line
2
in vitro differentiated cells
2
tissue
1
primary cell
Organ
23
liver
10
blood
10
bodily fluid
2
connective tissue
epithelium
Project
35
AMP
Genome assembly (visualization)
35
hg19
33
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA methylation
assay_title!
MeRIP-seq
files.file_type!
txt
organ_slims!
epithelium
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
cell line
HepG2
20
GM12878
10
in vitro differentiated cells
adipocyte
2
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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