Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
Hi-C
3
pCHi-C
Assay category
15
3D chromatin structure
Date released
11
March, 2020
3
October, 2019
2
August, 2021
1
August, 2018
1
November, 2019
Available data
3057
bam
2851
bigWig
1666
bed narrowPeak
1444
tsv
1086
fastq
966
bigBed narrowPeak
391
tagAlign
300
bed broadPeak
263
bigBed broadPeak
252
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
18
Homo sapiens
Biosample type
10
tissue
7
in vitro differentiated cells
1
cell line
Organ
7
pancreas
epithelium
3
heart
2
blood vessel
2
liver
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
vein
Project
18
AMP
Genome assembly (visualization)
16
hg19
Lab
16
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
assay_slims!
DNA methylation
assay_title!
MeRIP-seq
organ_slims!
epithelium
lymph node
BIOSAMPLE
ASSAY
18 results
search-icon
table-tab-icon
Clear Filters
Hi-C
pCHi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
cell line
HepG2
1
See all biosamples
Download