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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
29
ChIP-seq
6
Hi-C
5
total RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
29
DNA binding
7
Transcription
6
3D chromatin structure
DNA methylation
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
32
June, 2019
22
August, 2017
7
May, 2019
6
July, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
56
bigWig
51
bed narrowPeak
45
bed broadPeak
43
bam
38
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
7
tsv
2
bedpe bed3+
2
hic
1
txt
Organism
77
Homo sapiens
Biosample type
77
tissue
primary cell
Organ
771
liver
639
connective tissue
594
pancreas
483
adipose tissue
371
heart
317
kidney
264
brain
197
blood vessel
197
vasculature
158
bone element
139
artery
121
limb
118
epithelium
77
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
23
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
77
AMP
Genome assembly (visualization)
59
hg19
41
GRCh38
Lab
77
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
DNA methylation
assay_title!
WGBS
biosample_type!
primary cell
BIOSAMPLE
ASSAY
77 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
1
1
1
muscle of leg
13
7
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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