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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
50
ChIP-seq
10
snATAC-seq
single cell RNA-seq
1
pCHi-C
Assay category
190
Transcription
110
DNA accessibility
50
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
691
February, 2021
406
November, 2017
398
May, 2021
396
August, 2017
341
May, 2020
314
October, 2019
218
June, 2019
213
August, 2021
204
February, 2023
125
May, 2022
120
July, 2018
120
May, 2019
94
December, 2017
80
April, 2019
80
November, 2018
78
July, 2019
76
October, 2018
72
September, 2018
64
March, 2020
61
November, 2019
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
September, 2020
16
January, 2021
16
November, 2020
12
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
October, 2022
1
August, 2018
1
August, 2022
Available data
283
bam
260
bigWig
189
tsv
50
tagAlign
27
bed narrowPeak
Organism
350
Homo sapiens
Biosample type
203
tissue
147
primary cell
1
cell line
Organ
194
liver
10
lung
Project
296
AMP
45
T1D
10
LungMap
Genome assembly (visualization)
260
hg19
207
GRCh38
Lab
296
AMP-T2D consortium
45
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
Audit category:
8
inconsistent ontology term
assay_slims!
DNA methylation
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
351 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
pCHi-C
tissue
liver
143
50
lung
10
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
cell line
HepG2
1
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