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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
157
ChIP-seq
155
total RNA-seq
151
ATAC-seq
102
single cell RNA-seq
31
DNase-seq
17
pCHi-C
8
snATAC-seq
7
Hi-C
small RNA-seq
1
FAIRE-seq
Assay category
257
Transcription
191
DNA accessibility
157
DNA binding
DNA methylation
7
3D chromatin structure
Target of assay
237
histone
237
histone modification
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
139
May, 2021
56
September, 2018
48
July, 2018
47
June, 2019
43
April, 2018
42
August, 2017
22
October, 2019
20
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
August, 2021
3
February, 2021
3
June, 2018
3
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
507
bam
483
bigWig
262
tsv
206
fastq
183
bed narrowPeak
88
bigBed narrowPeak
49
tagAlign
41
bed broadPeak
41
bigBed broadPeak
36
bed bed3+
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
629
Homo sapiens
Biosample type
2420
tissue
642
cell line
629
primary cell
338
in vitro differentiated cells
9
stem cell
Organ
217
epithelium
167
pancreas
33
connective tissue
28
kidney
27
vasculature
22
blood vessel
20
brain
13
vein
12
heart
12
liver
8
blood
8
bodily fluid
8
musculature of body
4
eye
2
artery
1
adipose tissue
1
bone element
1
bone marrow
1
pericardium
Project
468
AMP
HPAP
160
T1D
1
ITG
Genome assembly (visualization)
495
hg19
428
GRCh38
Lab
453
AMP-T2D consortium
175
Kyle Gaulton, UCSD
1
ITG
Audit category:
44
inconsistent ontology term
1
audit script error
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA methylation
assay_title!
small RNA-seq
award.project!
HPAP
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
629 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
snATAC-seq
Hi-C
FAIRE-seq
primary cell
monocyte
41
54
15
1
pancreatic beta cell
10
10
7
12
pancreatic alpha cell
10
10
6
12
naive thymus-derived CD4-positive, alpha-beta T cell
1
1
22
1
pancreatic acinar cell
4
4
5
12
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