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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
17
total RNA-seq
4
ATAC-seq
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
pCHi-C
1
FAIRE-seq
Assay category
203
DNA binding
20
Transcription
5
DNA accessibility
3
3D chromatin structure
DNA methylation
Target of assay
175
histone
175
histone modification
109
narrow histone mark
66
broad histone mark
31
control
Date released
86
October, 2019
79
November, 2017
28
May, 2019
13
October, 2017
12
February, 2020
12
July, 2019
2
March, 2020
1
February, 2023
Available data
239
bam
218
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
22
tsv
21
fastq
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
233
Homo sapiens
Biosample type
224
tissue
9
primary cell
Organ
870
pancreas
718
liver
664
connective tissue
479
adipose tissue
449
epithelium
352
heart
271
kidney
233
brain
216
vasculature
215
blood vessel
159
bone element
137
artery
85
limb
69
blood
69
bodily fluid
56
eye
42
musculature of body
41
nerve
37
embryo
22
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
233
AMP
Genome assembly (visualization)
167
GRCh38
121
hg19
Lab
233
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
assay_slims!
DNA methylation
assay_title!
small RNA-seq
files.file_type!
bed broadPeak
month_released!
March, 2023
BIOSAMPLE
ASSAY
233 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
17
1
1
substantia nigra
15
1
temporal lobe
15
1
angular gyrus
15
+ See 72 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
Purkinje cell
1
brain pericyte
1
+ See 1 more…
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