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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
872
ChIP-seq
258
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1227
Transcription
872
DNA binding
264
DNA accessibility
DNA methylation
16
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
244
August, 2017
238
October, 2019
223
August, 2021
193
May, 2020
120
July, 2018
115
May, 2019
93
February, 2023
80
April, 2019
76
November, 2017
74
October, 2018
65
May, 2022
59
July, 2019
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
19
October, 2017
15
May, 2023
11
November, 2018
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
Available data
1890
bam
1756
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
364
fastq
238
tagAlign
bed broadPeak
204
bed bed3+
176
bigBed broadPeak
156
txt
64
xls
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2496
Homo sapiens
Biosample type
2498
tissue
696
primary cell
602
cell line
393
in vitro differentiated cells
10
stem cell
Organ
538
connective tissue
479
adipose tissue
468
pancreas
353
liver
277
heart
228
brain
224
kidney
158
bone element
126
blood vessel
126
vasculature
85
limb
69
artery
53
eye
41
nerve
31
musculature of body
22
spleen
16
skeleton
15
epithelium
10
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2421
AMP
47
KPMP
21
T1D
9
LungMap
Genome assembly (visualization)
1652
GRCh38
1549
hg19
Lab
2174
AMP-T2D consortium
136
Katalin Susztak, Upenn
47
KPMP
42
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
9
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
90
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
24
missing controlled_by
Audit category:
6
inconsistent control read length
assay_slims!
DNA methylation
assay_title!
snATAC-seq
award.project!
HPAP
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
2498 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
Hi-C
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
65
66
6
4
3
1
4
1
adipose tissue
382
2
3
1
liver
167
145
20
1
1
1
1
kidney
49
27
75
64
1
1
bone element
84
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