Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
85
ChIP-seq
18
ATAC-seq
16
pCHi-C
Assay category
85
DNA binding
18
DNA accessibility
DNA methylation
Target of assay
139
histone
139
histone modification
broad histone mark
63
narrow histone mark
13
transcription factor
9
control
5
RNA binding protein
Date released
356
November, 2017
233
August, 2021
211
October, 2019
198
August, 2017
192
June, 2019
147
May, 2020
133
May, 2022
119
May, 2021
103
February, 2023
81
November, 2018
80
February, 2021
75
December, 2017
59
May, 2019
55
October, 2018
49
April, 2018
47
September, 2023
43
April, 2019
43
September, 2020
42
July, 2018
37
July, 2019
36
March, 2020
35
December, 2018
30
September, 2018
21
January, 2019
20
May, 2024
20
November, 2019
19
April, 2020
16
February, 2018
16
January, 2021
14
May, 2023
13
October, 2017
11
September, 2017
8
January, 2018
7
August, 2020
6
November, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
December, 2019
2
June, 2018
1
August, 2022
Available data
65
bed narrowPeak
60
bigWig
56
bam
43
tagAlign
Organism
119
Homo sapiens
Biosample type
83
primary cell
35
in vitro differentiated cells
1
tissue
Organ
3
epithelium
3
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
63
AMP
56
T1D
Genome assembly (visualization)
73
hg19
55
GRCh38
Lab
101
Kyle Gaulton, UCSD
18
AMP-T2D consortium
Audit category:
inconsistent ontology term
assay_slims!
DNA methylation
assay_title!
total RNA-seq
audit.ERROR.category!
inconsistent ontology term
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
119 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
primary cell
monocyte
41
13
1
CD8-positive, alpha-beta T cell
13
1
CD4-positive, alpha-beta T cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
1
1
B cell
1
+ See 9 more…
in vitro differentiated cells
embryonic stem cell
27
5
pancreatic PP cell
3
tissue
thymus
1
See all biosamples
Download