Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1394
ChIP-seq
1144
total RNA-seq
289
ATAC-seq
180
DNase-seq
180
single cell RNA-seq
87
RNA microarray
35
pCHi-C
28
snATAC-seq
20
Hi-C
16
small RNA-seq
10
MeRIP-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
289
DNA accessibility
Date released
79
February, 2023
64
August, 2021
38
May, 2022
21
November, 2019
17
February, 2021
16
May, 2021
16
October, 2019
11
May, 2023
8
October, 2017
6
July, 2019
4
March, 2019
4
March, 2020
3
January, 2018
2
August, 2017
Available data
218
bed narrowPeak
74
bam
64
xls
46
bigWig
29
fastq
6
bed bed3
3
bigBed narrowPeak
2
bed broadPeak
2
tsv
Organism
289
Homo sapiens
Biosample type
260
tissue
primary cell
in vitro differentiated cells
29
cell line
Organ
81
pancreas
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
31
epithelium
28
eye
22
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
6
connective tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
278
AMP
11
T1D
Genome assembly (visualization)
168
GRCh38
135
hg19
Lab
160
AMP-T2D consortium
75
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
20
inconsistent ontology term
1
inconsistent replicate
assay_slims!
DNA methylation
biosample_type!
in vitro differentiated cells
primary cell
BIOSAMPLE
ASSAY
289 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
68
coronary artery
36
liver
20
retina
15
+ See 29 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
See all biosamples
Download