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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
255
ChIP-seq
245
total RNA-seq
198
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
27
DNase-seq
17
pCHi-C
9
Hi-C
2
small RNA-seq
Assay category
198
DNA accessibility
Date released
100
May, 2020
39
May, 2022
14
September, 2018
13
May, 2021
12
February, 2023
7
August, 2020
5
September, 2017
3
August, 2017
3
September, 2020
October, 2019
1
February, 2021
1
November, 2020
Available data
82
bam
78
bigWig
39
zippedFastqFolder
37
bed narrowPeak
32
fastq
22
bigBed narrowPeak
12
tsv
1
bed bed3
Organism
198
Homo sapiens
Biosample type
244
tissue
198
primary cell
38
in vitro differentiated cells
29
cell line
Organ
71
epithelium
71
pancreas
2
connective tissue
Project
149
AMP
49
HPAP
Genome assembly (visualization)
82
hg19
47
GRCh38
Lab
149
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
assay_slims!
DNA methylation
month_released!
October, 2019
BIOSAMPLE
ASSAY
198 results
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ATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
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