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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
115
total RNA-seq
39
ATAC-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
Assay category
39
DNA accessibility
Date released
18
May, 2022
14
February, 2023
5
May, 2021
2
August, 2021
Available data
22
bed narrowPeak
18
bam
18
fastq
10
bigWig
3
bed bedgraph
3
txt
Organism
39
Homo sapiens
Biosample type
29
tissue
10
in vitro differentiated cells
Organ
29
pancreas
2
connective tissue
Project
28
AMP
11
T1D
Genome assembly (visualization)
28
hg19
Lab
343
AMP-T2D consortium
75
Katalin Susztak, Upenn
49
Klaus Kaestner, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
39 results
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ATAC-seq
tissue
islet of Langerhans
29
in vitro differentiated cells
embryonic stem cell
6
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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