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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
605
ChIP-seq
297
ATAC-seq
263
single cell RNA-seq
250
total RNA-seq
87
RNA microarray
84
snATAC-seq
57
pCHi-C
32
Hi-C
10
MeRIP-seq
5
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
5
DNA accessibility
Date released
4
August, 2021
3
August, 2017
2
October, 2019
Available data
2
bam
2
bed bed3+
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
1
bed broadPeak
1
bigBed broadPeak
1
fastq
Organism
9
Homo sapiens
Biosample type
4
primary cell
2
cell line
2
in vitro differentiated cells
1
tissue
Organ
4
epithelium
2
connective tissue
2
kidney
2
pancreas
1
liver
Project
9
AMP
Genome assembly (visualization)
GRCh38
188
hg19
Lab
7
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
assay_slims!
DNA methylation
assay_title!
snDrop-seq
assembly!
GRCh38
BIOSAMPLE
ASSAY
9 results
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DNase-seq
Capture-C
primary cell
skeletal muscle myoblast
2
kidney glomerular epithelial cell
1
kidney tubule cell
1
cell line
EndoC_BH1
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
tissue
right lobe of liver
1
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