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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
92
ChIP-seq
72
ATAC-seq
70
single cell RNA-seq
18
DNase-seq
7
Hi-C
1
FAIRE-seq
Assay category
92
DNA binding
Target of assay
66
histone
66
histone modification
35
narrow histone mark
31
broad histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
26
August, 2017
24
October, 2019
21
September, 2018
6
June, 2019
6
November, 2017
5
May, 2019
4
August, 2021
Available data
92
bam
70
bigWig
66
bed narrowPeak
53
fastq
22
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
4
tagAlign
3
bed bed3+
Organism
92
Homo sapiens
Biosample type
92
primary cell
22
in vitro differentiated cells
15
cell line
Organ
92
epithelium
70
pancreas
23
vasculature
20
blood vessel
17
vein
15
kidney
12
connective tissue
10
musculature of body
9
brain
5
heart
4
liver
3
eye
Project
92
AMP
Genome assembly (visualization)
70
hg19
66
GRCh38
Lab
92
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
assay_slims!
DNA methylation
month_released!
May, 2020
BIOSAMPLE
ASSAY
92 results
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ChIP-seq
primary cell
endothelial cell of umbilical vein
17
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
epithelial cell of proximal tubule
10
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