Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
212
ChIP-seq
188
ATAC-seq
152
single cell RNA-seq
82
snATAC-seq
17
pCHi-C
8
Hi-C
5
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
286
Transcription
Date released
81
February, 2023
59
August, 2021
59
May, 2021
45
May, 2020
26
May, 2022
16
September, 2020
Available data
106
tsv
102
bam
98
bigWig
98
fastq
55
txt
2
bed bed3+
Organism
286
Homo sapiens
Biosample type
190
primary cell
82
tissue
9
cell line
5
in vitro differentiated cells
Organ
66
pancreas
53
epithelium
49
kidney
29
liver
Project
101
T1D
93
AMP
92
HPAP
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
AMP-T2D consortium
115
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
assay_slims!
DNA methylation
lab.title!
AMP-T2D consortium
organ_slims!
gonad
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
286 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
CD8-positive, alpha-beta T cell
4
+ See 23 more…
tissue
kidney
49
liver
20
islet of Langerhans
12
pancreas
1
cell line
HepG2
9
in vitro differentiated cells
embryonic stem cell
5
See all biosamples
Download