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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
20
ATAC-seq
6
total RNA-seq
5
pCHi-C
2
Capture-C
1
Hi-C
1
RNA microarray
Assay category
78
DNA binding
20
DNA accessibility
6
Transcription
DNA methylation
1
3D chromatin structure
Target of assay
44
histone
44
histone modification
34
control
28
broad histone mark
16
narrow histone mark
Date released
56
August, 2017
18
October, 2018
14
February, 2023
5
August, 2021
5
February, 2021
4
October, 2019
3
June, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
January, 2018
1
July, 2019
1
May, 2021
Available data
28
bam
25
fastq
22
tagAlign
8
bed bed3+
8
bigWig
5
bed bed3
4
bed bedgraph
4
bed narrowPeak
4
tsv
3
bigBed narrowPeak
1
bed broadPeak
1
bedpe bed3+
1
hdf5
Organism
112
Homo sapiens
Biosample type
63
tissue
43
in vitro differentiated cells
6
primary cell
1
stem cell
Organ
262
pancreas
254
liver
177
epithelium
145
kidney
123
heart
113
connective tissue
93
bone element
67
brain
63
adipose tissue
54
eye
43
vasculature
42
blood vessel
38
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
skeleton
7
embryo
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
112
AMP
1
T1D
Genome assembly (visualization)
588
hg19
GRCh38
Lab
108
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
assay_slims!
DNA methylation
assembly!
GRCh38
hg18
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
Capture-C
Hi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
3
1
islet of Langerhans
1
in vitro differentiated cells
adipocyte
19
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 1 more…
primary cell
cardiac fibroblast
2
adult endothelial progenitor cell
1
brain pericyte
1
mesenchymal stem cell
1
osteoblast
1
stem cell
mesenchymal stem cell
1
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