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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
19
ATAC-seq
9
total RNA-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
40
DNA binding
19
DNA accessibility
11
Transcription
3
3D chromatin structure
1
DNA sequencing
Target of assay
27
control
12
transcription factor
4
histone
4
histone modification
3
nucleotide modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
1
recombinant protein
Date released
November, 2017
36
August, 2021
16
May, 2021
10
October, 2019
6
February, 2023
6
March, 2020
6
November, 2020
4
February, 2021
4
November, 2018
3
January, 2019
3
November, 2019
2
March, 2023
1
December, 2018
1
January, 2018
1
May, 2020
1
October, 2022
Available data
22
bam
17
bigWig
15
tsv
14
bed narrowPeak
8
fastq
3
tagAlign
2
bedpe bed3+
2
hic
1
bed bed3+
1
txt
1
vcf
Organism
96
Homo sapiens
Biosample type
871
tissue
491
primary cell
129
in vitro differentiated cells
100
cell line
7
stem cell
Organ
37
pancreas
35
liver
30
epithelium
7
blood
7
bodily fluid
7
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
1
mammary gland
Project
93
AMP
5
T1D
2
community
Genome assembly (visualization)
264
hg19
GRCh38
Lab
53
AMP-T2D consortium
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
35
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_slims!
DNA methylation
assembly!
GRCh38
month_released!
November, 2017
BIOSAMPLE
ASSAY
100 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
MeRIP-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
EndoC_BH1
2
18
6
3
1
2
2
1
HepG2
19
9
2
2
2
1
GM12878
6
1
Panc1
7
EndoC-BH1
1
1
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