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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
71
ChIP-seq
56
snATAC-seq
17
pCHi-C
9
Hi-C
4
DNase-seq
1
FAIRE-seq
Assay category
212
DNA accessibility
184
Transcription
71
DNA binding
DNA methylation
9
3D chromatin structure
Target of assay
39
histone
39
histone modification
32
control
26
broad histone mark
13
narrow histone mark
1
RNA binding protein
transcription factor
Date released
102
May, 2020
93
May, 2022
88
February, 2023
56
May, 2021
56
September, 2020
40
February, 2021
15
August, 2017
12
October, 2019
8
January, 2021
8
June, 2019
4
July, 2019
3
November, 2017
3
October, 2022
1
August, 2021
1
March, 2020
1
May, 2019
1
November, 2018
1
September, 2018
Available data
172
fastq
112
zippedFastqFolder
93
bigWig
83
bam
33
bed narrowPeak
12
tsv
7
bed bed3+
5
hic
4
bedpe bed3+
4
hdf5
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
3
cool
2
csv
2
tagAlign
1
tar
Organism
493
Homo sapiens
Biosample type
866
tissue
493
primary cell
146
cell line
117
in vitro differentiated cells
7
stem cell
Organ
128
epithelium
107
pancreas
14
vasculature
13
blood vessel
10
vein
8
blood
8
bodily fluid
6
brain
6
connective tissue
5
kidney
2
heart
2
liver
2
musculature of body
1
bone element
1
bone marrow
1
eye
Project
267
HPAP
202
AMP
24
T1D
Genome assembly (visualization)
606
hg19
GRCh38
Lab
267
Klaus Kaestner, Upenn
167
AMP-T2D consortium
59
Kyle Gaulton, UCSD
Audit category:
31
audit script error
16
inconsistent ontology term
assay_slims!
DNA methylation
assembly!
GRCh38
month_released!
October, 2018
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
493 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
Hi-C
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
6
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
2
33
1
pancreatic beta cell
13
11
6
1
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