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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
292
ChIP-seq
174
single cell RNA-seq
135
total RNA-seq
101
ATAC-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
16
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
309
Transcription
292
DNA binding
134
DNA accessibility
DNA methylation
16
3D chromatin structure
Target of assay
184
control
109
histone
109
histone modification
60
narrow histone mark
49
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
165
August, 2021
94
August, 2017
93
February, 2021
77
October, 2019
66
May, 2022
60
February, 2023
47
September, 2023
31
May, 2020
30
March, 2020
29
October, 2018
25
February, 2020
24
November, 2017
23
May, 2019
19
April, 2020
16
April, 2019
12
December, 2017
9
October, 2017
8
January, 2021
6
July, 2019
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
May, 2023
2
January, 2018
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
1
November, 2019
Available data
203
bam
158
tsv
157
txt
122
tagAlign
101
bed narrowPeak
92
fastq
60
bigWig
bed broadPeak
11
hic
10
bedpe bed3+
6
bigBed narrowPeak
6
csv
5
bed bed3
1
bed bed3+
1
bedpe
Organism
866
Homo sapiens
Biosample type
869
tissue
490
primary cell
184
cell line
129
in vitro differentiated cells
7
stem cell
Organ
133
kidney
119
heart
118
liver
110
pancreas
92
bone element
62
connective tissue
61
adipose tissue
60
brain
53
eye
27
blood vessel
27
vasculature
26
limb
23
musculature of body
20
lung
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
774
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
1550
hg19
Lab
636
AMP-T2D consortium
67
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assay_slims!
DNA methylation
assembly!
GRCh38
files.file_type!
bed broadPeak
organ_slims!
ovary
BIOSAMPLE
ASSAY
869 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
36
32
45
7
4
3
1
4
kidney
7
64
49
6
1
1
liver
70
1
20
20
1
1
bone element
84
subcutaneous abdominal adipose tissue
35
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