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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
ChIP-seq
174
single cell RNA-seq
135
total RNA-seq
102
ATAC-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
309
Transcription
183
DNA binding
135
DNA accessibility
DNA methylation
16
3D chromatin structure
Target of assay
184
control
histone
134
histone modification
73
narrow histone mark
61
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
165
August, 2021
93
February, 2021
66
May, 2022
60
February, 2023
60
October, 2019
47
September, 2023
31
March, 2020
30
August, 2017
29
October, 2018
25
February, 2020
23
May, 2020
22
May, 2019
19
April, 2020
15
April, 2019
12
December, 2017
12
November, 2017
8
January, 2021
6
July, 2019
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
3
October, 2017
2
January, 2018
2
May, 2021
1
August, 2022
1
January, 2019
1
November, 2019
Available data
194
bam
159
tsv
157
txt
91
fastq
70
bed narrowPeak
52
tagAlign
29
bigWig
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
5
bigBed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bedpe
Organism
759
Homo sapiens
Biosample type
762
tissue
455
primary cell
192
cell line
87
in vitro differentiated cells
7
stem cell
Organ
133
kidney
118
heart
103
pancreas
92
bone element
90
liver
51
eye
42
brain
31
adipose tissue
31
connective tissue
27
blood vessel
27
vasculature
24
limb
20
lung
16
musculature of body
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
667
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
1309
hg19
Lab
528
AMP-T2D consortium
67
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
assay_slims!
DNA methylation
assembly!
GRCh38
month_released!
February, 2018
target.investigated_as!
histone
BIOSAMPLE
ASSAY
762 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
64
49
6
1
1
islet of Langerhans
11
32
46
7
4
3
1
4
liver
42
1
20
20
1
1
bone element
84
heart left ventricle
6
18
1
1
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