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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
12
total RNA-seq
2
ATAC-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
Assay category
45
DNA binding
12
Transcription
3
DNA accessibility
2
3D chromatin structure
DNA methylation
Target of assay
26
control
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
Date released
26
November, 2017
12
February, 2020
9
October, 2017
8
October, 2019
3
July, 2019
3
May, 2019
2
March, 2020
1
February, 2023
Available data
36
tagAlign
26
bam
14
tsv
5
bigWig
4
fastq
2
bed bed3+
2
bed narrowPeak
2
hdf5
1
bed bed3
1
bed broadPeak
1
bigBed narrowPeak
Organism
64
Homo sapiens
Biosample type
61
tissue
3
primary cell
Organ
262
pancreas
254
liver
epithelium
145
kidney
123
heart
113
connective tissue
93
bone element
67
brain
63
adipose tissue
54
eye
43
vasculature
42
blood vessel
38
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
64
AMP
Genome assembly (visualization)
GRCh38
153
hg19
Lab
64
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_slims!
DNA methylation
assembly!
GRCh38
organ_slims!
epithelium
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
FAIRE-seq
tissue
brain
9
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 20 more…
primary cell
astrocyte of the cerebellum
1
1
brain pericyte
1
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