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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
163
ChIP-seq
124
total RNA-seq
100
single cell RNA-seq
35
ATAC-seq
27
DNase-seq
2
small RNA-seq
1
Hi-C
Assay category
226
Transcription
163
DNA binding
62
DNA accessibility
1
3D chromatin structure
Target of assay
154
histone
154
histone modification
79
narrow histone mark
75
broad histone mark
9
RNA binding protein
9
transcription factor
3
control
1
chromatin remodeller
Date released
149
May, 2021
48
July, 2018
47
June, 2019
45
May, 2020
43
April, 2018
September, 2018
30
August, 2017
22
October, 2019
18
July, 2019
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
1
March, 2023
Available data
441
bam
435
bigWig
226
tsv
215
bed narrowPeak
145
fastq
98
tagAlign
91
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
30
bed bed3+
1
bed bed3
1
hic
Organism
452
Homo sapiens
Biosample type
1818
tissue
458
cell line
452
primary cell
260
in vitro differentiated cells
3
stem cell
Organ
164
epithelium
108
pancreas
32
connective tissue
28
kidney
22
vasculature
18
blood vessel
14
brain
12
vein
11
liver
11
musculature of body
10
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
261
AMP
180
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
534
hg19
452
GRCh38
Lab
261
AMP-T2D consortium
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
36
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA methylation
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
September, 2018
BIOSAMPLE
ASSAY
452 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
primary cell
monocyte
84
53
13
pancreatic alpha cell
7
12
10
pancreatic beta cell
7
12
6
pancreatic acinar cell
2
12
2
skeletal muscle myoblast
13
1
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