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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
315
ChIP-seq
5
total RNA-seq
Assay category
315
DNA binding
5
Transcription
DNA methylation
Target of assay
296
transcription factor
81
recombinant protein
57
RNA binding protein
28
chromatin remodeller
14
histone
14
histone modification
7
broad histone mark
7
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
56
November, 2018
27
December, 2018
20
January, 2019
Available data
457
bam
448
bigWig
357
bed narrowPeak
323
bigBed narrowPeak
320
fastq
100
tsv
45
bed broadPeak
45
bigBed broadPeak
14
tagAlign
2
bed bed3+
1
bed bed3
1
hdf5
Organism
320
Homo sapiens
Biosample type
320
cell line
272
tissue
229
primary cell
118
in vitro differentiated cells
3
stem cell
Organ
266
liver
54
blood
54
bodily fluid
Project
320
AMP
Genome assembly (visualization)
367
hg19
320
GRCh38
Lab
320
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
assay_slims!
DNA methylation
month_released!
March, 2020
BIOSAMPLE
ASSAY
320 results
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ChIP-seq
total RNA-seq
cell line
HepG2
261
5
GM12878
54
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