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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
350
ChIP-seq
177
DNase-seq
158
ATAC-seq
16
small RNA-seq
6
single cell RNA-seq
Assay category
918
Transcription
350
DNA binding
335
DNA accessibility
DNA methylation
Target of assay
496
histone modification
495
histone
252
narrow histone mark
broad histone mark
93
transcription factor
27
RNA binding protein
4
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
163
June, 2019
162
May, 2020
135
August, 2017
122
October, 2019
116
July, 2018
64
August, 2021
53
July, 2019
39
November, 2019
38
May, 2021
36
May, 2019
35
December, 2017
35
February, 2023
27
April, 2019
26
October, 2018
20
May, 2024
19
November, 2017
16
November, 2018
12
May, 2023
9
March, 2020
9
October, 2017
6
April, 2018
3
December, 2018
2
January, 2019
2
March, 2019
2
September, 2017
Available data
1467
bam
1456
bigWig
917
tsv
643
bed narrowPeak
351
bigBed narrowPeak
230
fastq
200
bed bed3+
183
bed broadPeak
176
bigBed broadPeak
76
tagAlign
64
xls
1
tagAlign bed3+
Organism
1601
Homo sapiens
Biosample type
1601
tissue
447
cell line
440
primary cell
228
in vitro differentiated cells
2
stem cell
Organ
478
connective tissue
420
adipose tissue
349
pancreas
225
liver
155
kidney
142
brain
128
heart
68
blood vessel
68
vasculature
66
bone element
61
limb
48
artery
37
musculature of body
18
ureter
15
nerve
10
spleen
8
skeleton
3
eye
1
pituitary gland
Project
1601
AMP
2
T1D
Genome assembly (visualization)
1603
GRCh38
1550
hg19
1
hg18
Lab
1505
AMP-T2D consortium
75
Katalin Susztak, Upenn
20
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
4
inconsistent control read length
assay_slims!
DNA methylation
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
1603 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
tissue
adipose tissue
382
1
islet of Langerhans
260
19
1
22
6
liver
147
65
2
1
kidney
10
13
75
bone tissue
58
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stem cell
hESC
2
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