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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
76
ChIP-seq
1
ATAC-seq
Assay category
197
DNA accessibility
76
DNA binding
Target of assay
40
histone
40
histone modification
36
transcription factor
21
broad histone mark
19
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
181
June, 2019
55
November, 2017
18
August, 2017
8
November, 2018
7
October, 2019
4
October, 2017
Available data
2379
bam
2353
bigWig
1561
bed narrowPeak
973
bigBed narrowPeak
926
tsv
869
fastq
273
bed broadPeak
258
bigBed broadPeak
246
tagAlign
239
bed bed3+
64
xls
1
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
267
Homo sapiens
Biosample type
189
tissue
45
cell line
39
primary cell
Organ
78
kidney
49
liver
46
brain
36
limb
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
14
pancreas
11
blood vessel
connective tissue
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
273
AMP
Genome assembly (visualization)
289
hg19
273
GRCh38
Lab
272
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
assay_slims!
DNA methylation
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
273 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
44
Panc1
1
primary cell
skeletal muscle myoblast
12
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
endothelial cell of umbilical vein
2
+ See 14 more…
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