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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
20
ATAC-seq
3
Hi-C
1
pCHi-C
Assay category
60
DNA binding
20
DNA accessibility
3
3D chromatin structure
DNA methylation
Target of assay
47
transcription factor
13
control
histone
13
histone modification
11
narrow histone mark
5
RNA binding protein
2
broad histone mark
2
chromatin remodeller
Date released
49
November, 2017
20
May, 2022
12
August, 2021
1
February, 2021
1
July, 2019
1
March, 2020
Available data
81
bigWig
63
bed narrowPeak
49
bam
49
fastq
32
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
hdf5
1
tagAlign
Organism
84
Homo sapiens
Biosample type
62
cell line
21
tissue
1
primary cell
Organ
84
liver
31
pancreas
27
eye
25
epithelium
24
connective tissue
8
brain
8
vasculature
7
blood vessel
4
bone element
4
musculature of body
4
skeleton
3
adipose tissue
3
heart
3
vein
2
kidney
1
blood
1
bodily fluid
Project
84
AMP
Genome assembly (visualization)
541
hg19
GRCh38
Lab
52
AMP-T2D consortium
20
Karen Mohlke, UNC
12
Bing Ren, UCSD
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
assay_slims!
DNA methylation
assembly!
GRCh38
target.investigated_as!
histone
BIOSAMPLE
ASSAY
84 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
cell line
HepG2
60
1
1
tissue
liver
20
1
primary cell
endothelial cell of hepatic sinusoid
1
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