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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
325
ChIP-seq
10
total RNA-seq
2
ATAC-seq
2
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
325
DNA binding
10
Transcription
4
DNA accessibility
1
3D chromatin structure
DNA methylation
Target of assay
279
transcription factor
78
recombinant protein
52
RNA binding protein
30
histone
30
histone modification
21
chromatin remodeller
16
broad histone mark
14
narrow histone mark
13
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
42
November, 2018
14
December, 2017
5
December, 2019
5
January, 2019
3
August, 2021
2
February, 2021
2
June, 2019
1
July, 2019
1
October, 2019
Available data
339
bam
338
bigWig
327
fastq
310
bed narrowPeak
305
bigBed narrowPeak
60
bed broadPeak
60
bigBed broadPeak
15
tagAlign
10
tsv
7
bed bed3+
3
tar
1
bed bed3
1
hdf5
Organism
341
Homo sapiens
Biosample type
315
cell line
tissue
14
in vitro differentiated cells
12
primary cell
Organ
341
liver
290
epithelium
242
pancreas
102
connective tissue
94
vasculature
89
blood vessel
74
heart
66
artery
55
blood
55
bodily fluid
34
kidney
29
embryo
20
brain
17
vein
11
musculature of body
3
eye
2
adipose tissue
1
pericardium
Project
341
AMP
Genome assembly (visualization)
341
hg19
292
GRCh38
Lab
341
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA methylation
biosample_type!
tissue
BIOSAMPLE
ASSAY
341 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
cell line
HepG2
308
5
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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