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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
865
total RNA-seq
529
ChIP-seq
161
DNase-seq
117
ATAC-seq
11
Hi-C
6
single cell RNA-seq
2
FAIRE-seq
1
snATAC-seq
Assay category
871
Transcription
529
DNA binding
281
DNA accessibility
11
3D chromatin structure
DNA methylation
Target of assay
438
histone modification
437
histone
239
narrow histone mark
198
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
177
August, 2017
170
May, 2020
163
October, 2019
147
June, 2019
116
July, 2018
93
May, 2019
65
April, 2019
July, 2019
45
October, 2018
40
November, 2019
39
May, 2022
38
May, 2021
36
December, 2017
33
February, 2023
18
March, 2020
17
November, 2018
13
October, 2017
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1594
bam
1593
bigWig
871
tsv
770
bed narrowPeak
491
bigBed narrowPeak
291
fastq
196
bed broadPeak
189
bed bed3+
160
bigBed broadPeak
105
tagAlign
11
hic
9
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1686
Homo sapiens
Biosample type
1692
tissue
596
primary cell
530
cell line
297
in vitro differentiated cells
3
stem cell
Organ
472
connective tissue
414
adipose tissue
407
pancreas
260
liver
133
brain
101
heart
96
limb
88
kidney
70
bone element
65
blood vessel
65
vasculature
57
musculature of body
31
nerve
30
eye
26
artery
18
ureter
14
spleen
12
epithelium
12
skeleton
1
pituitary gland
Project
1690
AMP
2
T1D
Genome assembly (visualization)
1790
GRCh38
1692
hg19
Lab
1649
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA methylation
files.file_type!
csv
month_released!
July, 2019
BIOSAMPLE
ASSAY
1692 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
260
31
1
42
2
6
1
liver
145
83
2
20
1
bone tissue
58
heart left ventricle
1
29
3
1
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