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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
8
single cell RNA-seq
2
ATAC-seq
1
MPRA
Assay category
67
Transcription
2
DNA accessibility
Date released
57
August, 2021
6
February, 2023
6
May, 2022
1
October, 2022
Available data
3162
bam
2960
bigWig
1754
bed narrowPeak
1437
tsv
1299
fastq
1018
bigBed narrowPeak
395
tagAlign
318
bed broadPeak
281
bigBed broadPeak
266
bed bed3+
112
zippedFastqFolder
70
txt
64
xls
14
hic
13
bedpe bed3+
12
bed bed3
6
bed bedgraph
5
hdf5
4
tar
3
csv
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
69
Homo sapiens
Biosample type
67
tissue
2
in vitro differentiated cells
1
cell line
Organ
57
kidney
6
pancreas
4
bone element
4
skeleton
Project
70
AMP
Genome assembly (visualization)
2
hg19
Lab
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
5
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
audit script error
assay_slims!
DNA methylation
audit.ERROR.category!
audit script error
inconsistent ontology term
BIOSAMPLE
ASSAY
70 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
tissue
kidney
49
8
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 1 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
cell line
MIN6
1
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