Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
31
ATAC-seq
Assay category
54
DNA binding
31
DNA accessibility
Target of assay
38
histone
38
histone modification
21
broad histone mark
17
narrow histone mark
16
transcription factor
6
RNA binding protein
Date released
40
May, 2024
20
May, 2022
16
August, 2021
5
May, 2021
3
February, 2023
1
October, 2017
Available data
160
bed narrowPeak
85
bigWig
66
txt
64
xls
26
fastq
25
bam
10
tsv
3
bed bedgraph
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
1
bedpe
1
vcf
Organism
85
Homo sapiens
Biosample type
primary cell
61
tissue
14
cell line
10
in vitro differentiated cells
Organ
40
heart
34
liver
2
connective tissue
1
pancreas
Project
85
AMP
Genome assembly (visualization)
45
hg19
41
GRCh38
Lab
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
DNA methylation
audit.ERROR.category!
audit script error
biosample_type!
primary cell
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
85 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
tissue
left cardiac atrium
40
liver
20
islet of Langerhans
1
cell line
HepG2
14
in vitro differentiated cells
embryonic stem cell
6
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
Download