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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
29
ChIP-seq
6
Hi-C
5
total RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
Assay category
33
DNA accessibility
29
DNA binding
7
Transcription
6
3D chromatin structure
DNA methylation
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
32
June, 2019
22
August, 2017
7
May, 2019
6
July, 2019
5
March, 2020
2
February, 2020
1
January, 2018
1
May, 2022
Available data
56
bigWig
51
bed narrowPeak
45
bed broadPeak
43
bam
38
bigBed narrowPeak
32
bed bed3+
32
bigBed broadPeak
15
tagAlign
7
tsv
2
bedpe bed3+
2
hic
Organism
76
Homo sapiens
Biosample type
76
tissue
13
primary cell
Organ
539
connective tissue
495
pancreas
481
adipose tissue
350
liver
296
heart
287
kidney
178
brain
158
bone element
105
blood vessel
105
vasculature
76
musculature of body
52
limb
47
artery
35
eye
23
spleen
20
lung
18
ureter
16
skeleton
14
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
76
AMP
Genome assembly (visualization)
58
hg19
41
GRCh38
Lab
76
AMP-T2D consortium
Audit category:
audit script error
1
inconsistent ontology term
assay_slims!
DNA methylation
audit.ERROR.category!
audit script error
month_released!
October, 2019
BIOSAMPLE
ASSAY
76 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
small RNA-seq
tissue
skeletal muscle tissue
22
1
1
1
1
muscle of leg
13
7
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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