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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
358
ChIP-seq
5
total RNA-seq
1
Hi-C
Assay category
358
DNA binding
5
Transcription
1
3D chromatin structure
DNA methylation
Target of assay
337
transcription factor
82
recombinant protein
63
RNA binding protein
control
30
chromatin remodeller
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
259
November, 2017
57
November, 2018
28
December, 2018
20
January, 2019
Available data
450
bigWig
448
bam
383
bed narrowPeak
364
fastq
355
bigBed narrowPeak
80
tsv
59
bed broadPeak
59
bigBed broadPeak
16
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
1
txt
1
vcf
Organism
364
Homo sapiens
Biosample type
379
primary cell
364
cell line
297
tissue
117
in vitro differentiated cells
3
stem cell
Organ
310
liver
54
blood
54
bodily fluid
Project
364
AMP
Genome assembly (visualization)
354
hg19
320
GRCh38
Lab
364
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA methylation
audit.ERROR.category!
inconsistent ontology term
target.investigated_as!
control
BIOSAMPLE
ASSAY
364 results
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ChIP-seq
total RNA-seq
Hi-C
cell line
HepG2
304
5
1
GM12878
54
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