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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
ChIP-seq
13
ATAC-seq
1
DNase-seq
Assay category
105
DNA binding
14
DNA accessibility
Target of assay
76
histone
76
histone modification
38
narrow histone mark
37
broad histone mark
29
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
43
August, 2017
32
December, 2017
25
August, 2021
16
February, 2018
2
May, 2021
1
February, 2023
Available data
190
bam
166
bigWig
137
fastq
119
bed narrowPeak
41
tsv
37
tagAlign
23
bed bed3+
17
bigBed narrowPeak
6
bed bedgraph
5
bed bed3
2
txt
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
119
Homo sapiens
Biosample type
980
tissue
383
cell line
270
primary cell
119
in vitro differentiated cells
2
stem cell
Organ
45
connective tissue
16
epithelium
14
liver
12
embryo
2
pancreas
Project
119
AMP
Genome assembly (visualization)
118
hg19
116
GRCh38
Lab
116
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
Audit category:
16
inconsistent control read length
assay_slims!
DNA methylation
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
119 results
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ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
42
1
1
neural progenitor cell
13
10
hepatocyte
14
pancreatic endoderm
12
definitive endodermal cell
6
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