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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
total RNA-seq
185
ATAC-seq
180
single cell RNA-seq
103
ChIP-seq
56
snATAC-seq
26
DNase-seq
16
pCHi-C
10
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
425
Transcription
268
DNA accessibility
103
DNA binding
DNA methylation
10
3D chromatin structure
Target of assay
182
histone
182
histone modification
broad histone mark
84
narrow histone mark
17
control
5
RNA binding protein
5
transcription factor
Date released
139
May, 2020
138
May, 2021
93
May, 2022
82
February, 2023
59
September, 2020
56
September, 2018
43
April, 2018
August, 2017
42
February, 2021
42
July, 2018
30
June, 2019
22
July, 2019
20
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
August, 2021
3
October, 2022
2
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
435
bigWig
430
bam
321
fastq
247
tsv
145
bed narrowPeak
112
zippedFastqFolder
60
bigBed narrowPeak
43
tagAlign
33
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
822
Homo sapiens
Biosample type
2148
tissue
822
primary cell
556
cell line
175
in vitro differentiated cells
8
stem cell
Organ
290
epithelium
236
pancreas
26
connective tissue
26
vasculature
22
blood vessel
21
kidney
20
brain
13
vein
11
liver
8
blood
8
bodily fluid
7
heart
5
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
389
AMP
277
HPAP
155
T1D
1
ITG
Genome assembly (visualization)
438
hg19
386
GRCh38
Lab
374
AMP-T2D consortium
277
Klaus Kaestner, Upenn
170
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
Audit category:
15
missing controlled_by
assay_slims!
DNA methylation
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2017
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
822 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
small RNA-seq
FAIRE-seq
primary cell
Langerhans cell
85
48
monocyte
54
15
41
1
pancreatic alpha cell
52
34
12
1
pancreatic beta cell
21
22
12
1
exocrine cell
39
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