Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
ChIP-seq
146
total RNA-seq
116
ATAC-seq
111
single cell RNA-seq
56
snATAC-seq
16
pCHi-C
10
DNase-seq
3
Hi-C
2
small RNA-seq
Assay category
259
Transcription
182
DNA accessibility
168
DNA binding
DNA methylation
3
3D chromatin structure
Target of assay
156
histone
156
histone modification
83
broad histone mark
73
narrow histone mark
11
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
204
May, 2021
139
May, 2020
54
May, 2022
45
February, 2023
42
February, 2021
40
September, 2020
29
August, 2017
15
July, 2019
14
June, 2019
12
September, 2018
10
April, 2018
10
July, 2018
8
January, 2021
November, 2020
3
November, 2017
1
June, 2018
1
March, 2023
1
November, 2018
Available data
345
bigWig
325
bam
168
bed narrowPeak
164
fastq
134
tsv
96
tagAlign
73
zippedFastqFolder
29
bigBed narrowPeak
24
bed broadPeak
24
bigBed broadPeak
13
bed bed3+
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
628
Homo sapiens
Biosample type
2629
tissue
628
primary cell
566
cell line
260
in vitro differentiated cells
9
stem cell
Organ
epithelium
294
pancreas
35
vasculature
31
blood vessel
26
kidney
22
vein
20
brain
20
connective tissue
12
liver
8
blood
8
bodily fluid
7
heart
5
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
256
AMP
199
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
358
hg19
276
GRCh38
Lab
234
Kyle Gaulton, UCSD
221
AMP-T2D consortium
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
inconsistent ontology term
27
audit script error
Audit category:
23
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_slims!
DNA methylation
audit.ERROR.category!
inconsistent ontology term
month_released!
November, 2020
organ_slims!
epithelium
BIOSAMPLE
ASSAY
628 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
DNase-seq
Hi-C
small RNA-seq
primary cell
monocyte
85
54
15
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
+ See 60 more…
See all biosamples
Download