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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1017
total RNA-seq
905
ChIP-seq
180
ATAC-seq
179
single cell RNA-seq
177
DNase-seq
26
snATAC-seq
23
pCHi-C
16
Hi-C
16
small RNA-seq
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1212
Transcription
905
DNA binding
387
DNA accessibility
DNA methylation
16
3D chromatin structure
Target of assay
626
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
270
August, 2017
240
October, 2019
229
August, 2021
193
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
59
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
38
March, 2020
24
February, 2020
23
October, 2017
20
November, 2018
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1886
bam
1753
bigWig
1069
tsv
917
bed narrowPeak
560
bigBed narrowPeak
364
fastq
238
tagAlign
212
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
69
txt
64
xls
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2544
Homo sapiens
Biosample type
2553
tissue
896
primary cell
563
cell line
264
in vitro differentiated cells
9
stem cell
Organ
539
connective tissue
481
pancreas
480
adipose tissue
356
liver
298
kidney
268
heart
260
brain
120
limb
96
blood vessel
96
vasculature
76
musculature of body
66
bone element
43
nerve
38
artery
25
eye
23
spleen
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
Project
2474
AMP
47
KPMP
19
LungMap
13
T1D
Genome assembly (visualization)
1804
GRCh38
1709
hg19
Lab
2219
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA methylation
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bed bedgraph
month_released!
February, 2023
BIOSAMPLE
ASSAY
2553 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
287
71
57
6
1
5
4
3
1
4
adipose tissue
382
2
2
1
liver
167
145
20
1
2
1
1
1
kidney
49
27
75
64
13
6
1
1
heart left ventricle
3
35
2
18
3
1
1
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