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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
12
total RNA-seq
1
GRO-seq
Assay category
14
DNA binding
12
Transcription
Target of assay
10
histone
10
histone modification
6
narrow histone mark
5
control
broad histone mark
3
transcription factor
Date released
10
February, 2018
8
August, 2021
8
December, 2017
1
January, 2018
Available data
26
bam
21
bigWig
19
fastq
12
tsv
8
bed narrowPeak
2
bed bed3+
Organism
27
Homo sapiens
Biosample type
19
in vitro differentiated cells
8
cell line
Organ
739
liver
734
pancreas
618
connective tissue
463
adipose tissue
339
epithelium
318
heart
313
kidney
211
brain
185
vasculature
181
blood vessel
127
artery
86
limb
75
bone element
69
blood
69
bodily fluid
63
musculature of body
60
eye
27
embryo
27
nerve
20
lung
19
spleen
18
ureter
16
skeleton
12
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
27
AMP
Genome assembly (visualization)
21
GRCh38
21
hg19
1
hg18
Lab
27
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
1
inconsistent control read length
assay_slims!
DNA methylation
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bedpe bed3+
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
27 results
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Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
14
4
1
cell line
H1-hESC
8
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