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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ChIP-seq
47
ATAC-seq
29
DNase-seq
Assay category
111
DNA binding
76
DNA accessibility
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
transcription factor
10
RNA binding protein
Date released
47
April, 2019
40
May, 2024
35
February, 2023
29
June, 2019
15
May, 2019
12
February, 2021
5
October, 2019
4
July, 2019
Available data
214
bigWig
187
bed narrowPeak
181
bam
168
tsv
90
bigBed narrowPeak
29
bed bed3+
29
bed broadPeak
29
bigBed broadPeak
4
tagAlign
3
bedpe bed3+
3
hic
Organism
187
Homo sapiens
Biosample type
173
tissue
12
cell line
2
primary cell
Organ
440
liver
201
brain
200
pancreas
187
heart
171
kidney
132
vasculature
129
blood vessel
129
epithelium
91
limb
74
artery
64
connective tissue
54
blood
54
bodily fluid
52
musculature of body
33
eye
27
nerve
18
ureter
14
spleen
13
vein
12
adipose tissue
12
embryo
8
bone element
8
skeleton
1
pituitary gland
Project
187
AMP
Genome assembly (visualization)
186
GRCh38
109
hg19
Lab
147
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
inconsistent ontology term
assay_slims!
DNA methylation
audit.ERROR.category!
inconsistent ontology term
target.investigated_as!
control
BIOSAMPLE
ASSAY
187 results
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ChIP-seq
ATAC-seq
DNase-seq
tissue
coronary artery
3
36
2
left cardiac atrium
40
1
heart left ventricle
29
2
3
heart
12
18
heart right ventricle
11
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
4
8
primary cell
cardiac fibroblast
2
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