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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ChIP-seq
9
DNase-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
187
DNA binding
10
DNA accessibility
DNA methylation
1
Transcription
Target of assay
91
histone
91
histone modification
68
transcription factor
58
broad histone mark
33
narrow histone mark
28
control
25
RNA binding protein
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
581
February, 2021
406
November, 2017
396
August, 2017
333
May, 2020
316
August, 2021
308
May, 2021
291
October, 2019
194
February, 2023
192
June, 2019
162
July, 2018
159
May, 2022
117
May, 2019
90
December, 2017
81
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
1
March, 2023
Available data
197
bam
168
bed narrowPeak
168
bigBed narrowPeak
168
bigWig
81
fastq
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
1
csv
Organism
198
Homo sapiens
Biosample type
135
tissue
60
cell line
3
primary cell
Organ
52
liver
50
blood vessel
50
vasculature
30
brain
21
heart
15
blood
15
bodily fluid
7
limb
7
musculature of body
7
spleen
5
artery
5
pancreas
2
epithelium
2
kidney
1
adipose tissue
1
connective tissue
Project
198
AMP
Genome assembly (visualization)
166
GRCh38
166
hg19
Lab
198
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA methylation
audit.ERROR.category!
inconsistent ontology term
lab.title!
Anna Gloyn, Oxford
BIOSAMPLE
ASSAY
198 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
single cell RNA-seq
tissue
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
aorta
13
+ See 12 more…
cell line
HepG2
45
GM12878
15
primary cell
kidney epithelial cell
2
pancreatic cell
1
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