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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1018
total RNA-seq
894
ChIP-seq
181
ATAC-seq
179
single cell RNA-seq
178
DNase-seq
86
RNA microarray
25
pCHi-C
25
snATAC-seq
16
Hi-C
16
small RNA-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1213
Transcription
894
DNA binding
388
DNA accessibility
DNA methylation
16
3D chromatin structure
Target of assay
616
histone modification
615
histone
319
narrow histone mark
296
broad histone mark
186
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
258
August, 2017
242
October, 2019
228
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
February, 2023
82
November, 2017
80
April, 2019
73
October, 2018
66
May, 2022
59
July, 2019
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
20
November, 2018
18
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1877
bam
1744
bigWig
1072
tsv
909
bed narrowPeak
549
bigBed narrowPeak
351
fastq
231
tagAlign
207
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
153
txt
64
xls
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2629
Homo sapiens
Biosample type
2629
tissue
937
primary cell
626
cell line
361
in vitro differentiated cells
6
stem cell
Organ
539
connective tissue
480
adipose tissue
469
pancreas
355
liver
298
kidney
268
heart
263
brain
150
bone element
121
limb
96
blood vessel
96
vasculature
77
musculature of body
43
nerve
38
artery
25
eye
23
spleen
19
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2551
AMP
47
KPMP
18
LungMap
13
T1D
Genome assembly (visualization)
1796
GRCh38
1701
hg19
Lab
2296
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
18
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
inconsistent control read length
assay_slims!
DNA methylation
audit.WARNING.category!
inconsistent control read length
month_released!
February, 2023
BIOSAMPLE
ASSAY
2629 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
287
71
57
6
1
4
5
3
1
4
adipose tissue
382
2
2
1
liver
167
144
20
1
2
1
1
1
kidney
49
27
75
64
13
6
1
1
bone element
84
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