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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
187
single cell RNA-seq
151
total RNA-seq
116
ChIP-seq
48
snATAC-seq
31
DNase-seq
10
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
340
Transcription
280
DNA accessibility
116
DNA binding
DNA methylation
10
3D chromatin structure
Target of assay
152
histone
152
histone modification
broad histone mark
74
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
93
May, 2022
88
February, 2023
59
September, 2020
56
September, 2018
48
July, 2018
47
June, 2019
43
April, 2018
42
February, 2021
41
August, 2017
32
May, 2021
22
July, 2019
22
October, 2019
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
August, 2021
3
June, 2018
3
May, 2019
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
372
bam
368
fastq
358
bigWig
168
tsv
142
bed narrowPeak
112
zippedFastqFolder
87
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
36
bed bed3+
9
tagAlign
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
747
Homo sapiens
Biosample type
2405
tissue
747
primary cell
625
cell line
338
in vitro differentiated cells
9
stem cell
Organ
322
epithelium
272
pancreas
33
connective tissue
28
kidney
27
vasculature
22
blood vessel
20
brain
13
vein
12
heart
12
liver
9
musculature of body
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
469
AMP
277
HPAP
T1D
1
ITG
Genome assembly (visualization)
363
hg19
303
GRCh38
Lab
454
AMP-T2D consortium
277
Klaus Kaestner, Upenn
15
Kyle Gaulton, UCSD
1
ITG
Audit category:
39
inconsistent ontology term
31
audit script error
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
inconsistent control run_type
assay_slims!
DNA methylation
audit.WARNING.category!
inconsistent control run_type
award.project!
T1D
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
747 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
DNase-seq
Hi-C
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
35
12
52
10
1
pancreatic beta cell
23
12
21
10
1
exocrine cell
39
pancreatic acinar cell
9
12
4
4
1
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