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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
total RNA-seq
101
ATAC-seq
50
ChIP-seq
1
DNase-seq
1
pCHi-C
Assay category
149
Transcription
102
DNA accessibility
50
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
670
February, 2021
402
November, 2017
388
August, 2017
314
October, 2019
296
May, 2020
218
June, 2019
168
July, 2018
163
May, 2021
150
August, 2021
120
May, 2019
102
February, 2023
94
December, 2017
81
July, 2019
80
April, 2019
77
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
22
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
Available data
244
bam
220
bigWig
148
tsv
50
tagAlign
29
bed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
302
Homo sapiens
Biosample type
193
tissue
108
primary cell
1
cell line
Organ
194
liver
6
connective tissue
Project
302
AMP
Genome assembly (visualization)
221
hg19
168
GRCh38
Lab
302
AMP-T2D consortium
45
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
4
inconsistent ontology term
assay_slims!
DNA methylation
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
302 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
pCHi-C
tissue
liver
143
50
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
osteoblast
4
1
1
B cell
2
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cell line
HepG2
1
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