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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
14
total RNA-seq
1
GRO-seq
Assay category
18
DNA binding
14
Transcription
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
broad histone mark
3
transcription factor
Date released
12
December, 2017
10
February, 2018
8
August, 2021
2
May, 2021
1
January, 2018
Available data
32
bam
25
bigWig
23
fastq
14
tsv
10
bed narrowPeak
2
bed bed3+
Organism
33
Homo sapiens
Biosample type
25
in vitro differentiated cells
8
cell line
Organ
801
pancreas
731
liver
631
connective tissue
464
adipose tissue
421
epithelium
333
kidney
319
heart
212
brain
184
vasculature
179
blood vessel
159
bone element
127
artery
87
limb
69
blood
69
bodily fluid
65
musculature of body
60
eye
33
embryo
27
nerve
19
lung
18
spleen
18
ureter
16
skeleton
12
vein
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
1
thymus
Project
33
AMP
Genome assembly (visualization)
25
GRCh38
25
hg19
1
hg18
Lab
33
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
assay_slims!
DNA methylation
audit.WARNING.category!
inconsistent control run_type
month_released!
March, 2020
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
33 results
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Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
14
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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