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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
Assay category
31
DNA binding
Target of assay
23
transcription factor
20
histone
20
histone modification
chromatin remodeller
11
narrow histone mark
9
broad histone mark
4
RNA binding protein
1
recombinant protein
Date released
14
August, 2017
11
December, 2017
3
November, 2017
2
February, 2018
1
October, 2018
Available data
43
bam
43
bigWig
43
fastq
41
bed narrowPeak
20
bigBed narrowPeak
bed broadPeak
12
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
31
Homo sapiens
Biosample type
15
in vitro differentiated cells
6
tissue
5
primary cell
3
cell line
2
stem cell
Organ
9
pancreas
5
epithelium
4
connective tissue
4
liver
3
embryo
Project
31
AMP
Genome assembly (visualization)
31
hg19
30
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
31
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA methylation
files.file_type!
bed broadPeak
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
in vitro differentiated cells
adipocyte
4
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
cell line
HepG2
3
stem cell
hESC
2
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