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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
155
total RNA-seq
151
ATAC-seq
102
single cell RNA-seq
31
DNase-seq
17
pCHi-C
7
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
279
DNA binding
259
Transcription
183
DNA accessibility
DNA methylation
7
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
73
September, 2018
58
August, 2017
55
June, 2019
48
July, 2018
43
April, 2018
34
October, 2019
22
July, 2019
12
February, 2023
9
November, 2017
January, 2021
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
609
bam
603
bigWig
295
bed narrowPeak
264
tsv
239
fastq
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
745
Homo sapiens
Biosample type
2731
tissue
745
primary cell
661
cell line
in vitro differentiated cells
10
stem cell
Organ
248
epithelium
194
pancreas
38
connective tissue
36
vasculature
33
kidney
31
blood vessel
22
vein
20
brain
13
liver
13
musculature of body
12
heart
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
548
AMP
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
615
hg19
526
GRCh38
Lab
513
AMP-T2D consortium
231
Kyle Gaulton, UCSD
1
ITG
Audit category:
52
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA methylation
award.project!
HPAP
biosample_type!
in vitro differentiated cells
month_released!
January, 2021
BIOSAMPLE
ASSAY
745 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
Hi-C
small RNA-seq
FAIRE-seq
primary cell
monocyte
85
54
15
1
pancreatic beta cell
13
10
7
12
pancreatic alpha cell
13
10
6
12
CD8-positive, alpha-beta T cell
33
4
2
1
pancreatic ductal cell
13
4
4
10
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