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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
258
ChIP-seq
153
total RNA-seq
151
ATAC-seq
102
single cell RNA-seq
17
pCHi-C
8
snATAC-seq
7
Hi-C
3
DNase-seq
2
small RNA-seq
1
FAIRE-seq
Assay category
258
DNA binding
257
Transcription
163
DNA accessibility
DNA methylation
7
3D chromatin structure
Target of assay
221
histone
221
histone modification
114
broad histone mark
107
narrow histone mark
35
control
5
RNA binding protein
5
transcription factor
Date released
205
May, 2021
147
May, 2020
73
September, 2018
48
July, 2018
44
August, 2017
43
April, 2018
31
June, 2019
30
October, 2019
20
July, 2019
12
February, 2023
8
January, 2021
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
3
November, 2017
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
607
bam
601
bigWig
295
bed narrowPeak
262
tsv
239
fastq
109
bigBed narrowPeak
100
tagAlign
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
702
Homo sapiens
Biosample type
2457
tissue
702
primary cell
536
cell line
393
in vitro differentiated cells
10
stem cell
Organ
226
epithelium
194
pancreas
32
connective tissue
24
vasculature
23
blood vessel
23
kidney
18
vein
12
musculature of body
11
liver
9
brain
9
heart
8
blood
8
bodily fluid
3
eye
2
adipose tissue
artery
1
bone element
1
bone marrow
1
pericardium
Project
497
AMP
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
571
hg19
479
GRCh38
Lab
462
AMP-T2D consortium
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA methylation
award.project!
HPAP
files.file_type!
bed broadPeak
organ_slims!
artery
BIOSAMPLE
ASSAY
702 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
snATAC-seq
Hi-C
DNase-seq
small RNA-seq
FAIRE-seq
primary cell
monocyte
85
54
15
1
pancreatic beta cell
13
10
7
12
pancreatic alpha cell
13
10
6
12
CD8-positive, alpha-beta T cell
33
4
2
1
pancreatic ductal cell
13
4
4
10
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