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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
60
ChIP-seq
58
total RNA-seq
9
ATAC-seq
8
snATAC-seq
1
pCHi-C
Assay category
60
DNA binding
58
Transcription
17
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
150
February, 2021
27
December, 2018
18
January, 2019
15
November, 2018
February, 2023
8
January, 2021
1
January, 2018
1
May, 2021
Available data
126
bam
113
bigWig
84
txt
62
bed narrowPeak
60
fastq
58
tsv
54
bigBed narrowPeak
Organism
220
Homo sapiens
Biosample type
150
tissue
61
cell line
9
primary cell
Organ
784
liver
769
pancreas
663
connective tissue
484
adipose tissue
351
epithelium
350
kidney
347
heart
283
brain
198
vasculature
193
blood vessel
151
bone element
121
limb
106
artery
90
musculature of body
69
blood
69
bodily fluid
43
nerve
37
embryo
29
eye
23
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
211
AMP
9
T1D
Genome assembly (visualization)
121
hg19
120
GRCh38
Lab
211
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
inconsistent control
assay_slims!
DNA methylation
award.project!
HPAP
month_released!
February, 2023
BIOSAMPLE
ASSAY
220 results
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RNA microarray
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
tissue
bone element
84
bone tissue
58
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 5 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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