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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
53
ChIP-seq
6
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
53
DNA binding
8
DNA accessibility
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
31
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
440
bam
423
bigWig
401
tsv
41
fastq
13
bed narrowPeak
10
bigBed narrowPeak
6
bed bed3+
4
tagAlign
3
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
464
Homo sapiens
Biosample type
462
tissue
2
primary cell
1
in vitro differentiated cells
Organ
781
pancreas
742
liver
632
connective tissue
465
adipose tissue
423
epithelium
335
kidney
326
heart
214
brain
188
vasculature
183
blood vessel
158
bone element
127
artery
87
limb
70
musculature of body
61
blood
61
bodily fluid
60
eye
33
embryo
27
nerve
20
lung
19
spleen
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
465
AMP
Genome assembly (visualization)
426
hg19
422
GRCh38
Lab
465
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
DNA methylation
award.project!
T1D
award.project!!
T1D
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
465 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
subcutaneous abdominal adipose tissue
16
white adipose tissue
12
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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