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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
12
total RNA-seq
3
Hi-C
2
ATAC-seq
2
pCHi-C
Assay category
22
DNA binding
12
Transcription
3
3D chromatin structure
2
DNA accessibility
DNA methylation
Target of assay
21
histone
21
histone modification
12
narrow histone mark
9
broad histone mark
1
control
Date released
13
November, 2017
12
February, 2020
7
October, 2017
3
July, 2019
3
October, 2019
2
March, 2020
1
February, 2023
Available data
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
41
Homo sapiens
Biosample type
38
tissue
3
primary cell
Organ
206
kidney
180
pancreas
178
heart
154
epithelium
104
liver
92
bone element
85
connective tissue
53
eye
50
blood vessel
50
vasculature
adipose tissue
41
brain
39
artery
34
musculature of body
20
lung
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
vein
1
adrenal gland
1
blood
1
bodily fluid
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
41
AMP
Genome assembly (visualization)
7
hg19
2
GRCh38
Lab
41
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_slims!
DNA methylation
award.project!
T1D
files.file_type!
bam
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
pCHi-C
tissue
brain
7
1
cingulate gyrus
6
layer of hippocampus
3
substantia nigra
2
1
Ammon's horn
1
1
+ See 15 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
See all biosamples
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